AlignTranscript ( Align mRNA, Genomic and Protein Sequence )
by Ivano Zara

This Application aligns the sequence of a transcript with the respective genomic sequence (which may also differ from that of the transcript) in a neighborhood of a chosen position.
The Application also aligns the translations of the genomic and transcript sequence (remember that they can be different).
The alignments are shown only if the position falls on gene sequences.


Show nt around the center
 
Genomic Release:

Center from cDNA position
Variant (Hgvs mode )
    (c...etc)
Gene:  OR/AND transcript ID:
The name of the gene or ID transcript (NM_..) is required
OR Pos Center in mRNA
(format: -nn for 5'UTR ; *nn for 3'UTR ; nn for CDS)