AlignTranscript ( Align mRNA, Genomic and Protein Sequence )
by Ivano Zara

This Application aligns the sequence of a transcript with the respective genomic sequence (which may also differ from that of the transcript) in a neighborhood of a chosen position.
The Application also aligns the translations of the genomic and transcript sequence (remember that they can be different).
The alignments are shown only if the position falls on gene sequences.
Try our example
Genomic realease hg38

Chromosome: 1 ;
Center in Genomic position 156114969 (window is 50+50 nt around the center);
Note: this genomic position fall into transcript gene LMNA (NM_170708)


Show nt around the center
 
Genomic Release:

Center from Genomic position
The genomic position must fall within a gene
Chromosome:       Pos:

optional if there is only one gene in this genomic position
Genename:  OR cDNA ID:
mandatory if multiple genes coexist on the same genomic position.