Genomic Position Converter hg19 to hg38 and vice versa Release 2020_09, by Ivano Zara For any problem write to ivano.zara.bio@gmail.com |
This program derives the correspondences between the different genomic releases, using the 'hg19ToHg38.over.chain and hg38ToHg19.over.chain' file of the UCSC, where the alignment data of the different genomic sequences are reported |
(* note) The 'OverChain' file (by UCSC) of genomic alignments does not consider small mismatches to be aligned. Therefore positions that fall into these mismatches would not be converted. This APP also allows you to convert genomic positions that fall into mismatched regions whose maximum length can be set by the user. A warning is displayed if the position falls within a region of mismatches. |